Residents of the human body. Common sites are skin, oropharynx, colon and vagina. Viruses and fungi can also be found in healthy individuals but they are not considered as normal flora. The number and the type of bacteria are varying according to the site of the body. Usually internal organs are free of any organisms.
| Members of the normal flora | Anatomic location |
| Bacteroides species | |
| Candida albicans | Mouth, colon, vagina |
| Clostridium species | colon |
| Corynebacterium species | Nasopharynx, skin, vagina |
| Enterococcus faecalis | colon |
| E. coli and other coliforms | |
| Gardnerella vaginalis | Vagina |
| Haemophilus species | Nasopharynx, conjunctiva |
| Lactobacillus species | Mouth, colon, vagina |
| Neisseria species | Mouth, nasopharynx |
| Propionibacterium acnes | skin |
| Pseudomonas aeruginosa | |
| Staphylococcus aureus | Nose, skin |
| Staphylococcus epidermidis | Skin, nose, mouth, vagina, urethra |
| Viridans streptococci | Mouth, nasopharynx |
Skin is the site where most of the normal flora bacteria are found. Staphylococcus epidermidis is the predominant organisms. It is a non-pathogenic bacteria but it can be dangerous if it reaches prosthesis such as artificial heart valve. Other common bacteria are Propionibacterium and Candida albicans.
Normal flora of the respiratory tract
Nose, mouth and throat are the site where bacteria are found. Usually lower bronchi and alveoli are free of organisms. Streptococci species are the predominant organisms found in the respiratory tract. Neisseria species, eikenella and bacteroides are also found in the respiratory tract.
Normal flora of the intestinal tract
In normal fasting people, the stomach contains few organisms because of its low pH and its enzymes. The small intestine usually contains small numbers of streptococci, lactobacilli and yeasts. The colon is the major location of bacteria in the body.
Major bacteria found in the colon
| Bacterium | Number/g faeces | Important pathogens |
| Bacteroides (B.fragilis) | 1010-1011 | Yes |
| Bifidobacterium | 1010 | No |
| Eubacterium | 1010 | No |
| Coliforms | 107-108 | Yes |
| Enterococcus | 107-108 | Yes |
| Lactobacillus | 107 | No |
| Clostridium | 106 | Yes |
Normal flora of the vagina and urethra
The vaginal flora of adult women consists primarily of lactobacillus species. Since the vagina is located close to the anus members of faecal flora can also be found. Usually urine of a healthy individual is sterile. But organisms can be found in urethra.

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